OBO Foundry dashboard analysis

Back to dashboard main page

/usr/local/lib/python3.8/dist-packages/pandas/core/arrays/categorical.py:2630: FutureWarning:

The `inplace` parameter in pandas.Categorical.reorder_categories is deprecated and will be removed in a future version. Removing unused categories will always return a new Categorical object.

Ontologies by number of axioms

Ontologies by number of classes

Ontologies by how many ontologies use it

Different serialisations used

RDF/XML Syntax           171
OWL/XML Syntax             3
RDF/XML                    2
unknown                    1
OWL Functional Syntax      1
Name: syntax, dtype: int64

Breakdown of used Axiom Types

	count	mean	std	min	25%	50%	75%	max
AnnotationAssertion	177	148632.882022	785450.879200	0.0	1408.50	7102.5	29057.00	9525482.0
Declaration	177	28023.056180	182552.486263	0.0	419.00	1211.0	4993.25	2334937.0
SubClassOf	172	37969.758427	206779.973115	0.0	343.25	1347.5	6475.75	2334908.0
EquivalentClasses	122	2627.005618	13463.557777	0.0	0.00	25.0	205.00	125954.0
TransitiveObjectProperty	117	6.191011	10.629749	0.0	0.00	2.0	6.00	69.0
SubAnnotationPropertyOf	112	8.146067	17.544166	0.0	0.00	2.0	7.00	141.0
SubObjectPropertyOf	106	38.651685	90.322098	0.0	0.00	2.0	39.50	651.0
DisjointClasses	94	27.393258	81.192401	0.0	0.00	1.0	21.00	603.0
ObjectPropertyDomain	85	14.297753	26.688750	0.0	0.00	0.0	18.00	142.0
ObjectPropertyRange	85	14.067416	26.238497	0.0	0.00	0.0	18.75	139.0
InverseObjectProperties	82	9.039326	17.111916	0.0	0.00	0.0	13.75	107.0
SubPropertyChainOf	67	8.730337	23.020877	0.0	0.00	0.0	2.00	142.0
ClassAssertion	60	73.073034	467.165513	0.0	0.00	0.0	17.00	5528.0
FunctionalObjectProperty	46	0.758427	1.658078	0.0	0.00	0.0	1.00	9.0
SymmetricObjectProperty	46	1.550562	8.387523	0.0	0.00	0.0	1.00	79.0
DataPropertyRange	42	1.033708	3.047457	0.0	0.00	0.0	0.00	30.0
DataPropertyDomain	36	0.955056	3.002485	0.0	0.00	0.0	0.00	32.0
IrrefexiveObjectProperty	35	0.595506	2.346865	0.0	0.00	0.0	0.00	26.0
DifferentIndividuals	32	0.646067	3.880053	0.0	0.00	0.0	0.00	51.0
AnnotationPropertyRangeOf	30	1.275281	9.868489	0.0	0.00	0.0	0.00	129.0
EquivalentObjectProperties	28	1.511236	5.545129	0.0	0.00	0.0	0.00	36.0
SubDataPropertyOf	26	0.617978	2.881876	0.0	0.00	0.0	0.00	33.0
FunctionalDataProperty	22	0.398876	1.285907	0.0	0.00	0.0	0.00	10.0
DisjointObjectProperties	17	0.230337	1.128862	0.0	0.00	0.0	0.00	10.0
Rule	16	1.252809	4.633228	0.0	0.00	0.0	0.00	22.0
AsymmetricObjectProperty	16	0.398876	2.179358	0.0	0.00	0.0	0.00	26.0
ObjectPropertyAssertion	12	5.971910	56.709332	0.0	0.00	0.0	0.00	747.0
ReflexiveObjectProperty	11	0.112360	0.508420	0.0	0.00	0.0	0.00	4.0
InverseFunctionalObjectProperty	11	0.106742	0.444501	0.0	0.00	0.0	0.00	3.0
AnnotationPropertyDomain	10	0.269663	1.631360	0.0	0.00	0.0	0.00	17.0
DisjointUnion	7	0.089888	0.565295	0.0	0.00	0.0	0.00	5.0
DataPropertyAssertion	5	0.550562	5.809618	0.0	0.00	0.0	0.00	75.0
DatatypeDefinition	2	0.112360	1.425658	0.0	0.00	0.0	0.00	19.0
SameIndividual	1	0.005618	0.074953	0.0	0.00	0.0	0.00	1.0

Breakdown of used OWL Class Expression constructs

	count	mean	std	min	25%	50%	75%	max
Class	176	116251.764045	610596.449207	0.0	1352.00	5001.5	19743.75	7004726.0
ObjectSomeValuesFrom	157	17581.033708	84414.220057	0.0	37.25	467.0	2701.00	788787.0
ObjectIntersectionOf	118	4374.202247	20345.147338	0.0	0.00	29.5	374.75	191695.0
ObjectUnionOf	86	28.258427	90.351045	0.0	0.00	0.0	16.75	767.0
ObjectAllValuesFrom	71	28.376404	149.189217	0.0	0.00	0.0	9.75	1764.0
ObjectComplementOf	64	7.949438	42.286790	0.0	0.00	0.0	2.00	528.0
ObjectMinCardinality	56	2.477528	8.488081	0.0	0.00	0.0	1.00	57.0
ObjectExactCardinality	43	9.044944	89.717688	0.0	0.00	0.0	0.00	1193.0
ObjectOneOf	41	3.724719	28.660245	0.0	0.00	0.0	0.00	273.0
DataMinCardinality	24	0.241573	0.691401	0.0	0.00	0.0	0.00	4.0
DataSomeValuesFrom	22	7.162921	65.348102	0.0	0.00	0.0	0.00	859.0
DataExactCardinality	20	0.505618	1.598895	0.0	0.00	0.0	0.00	7.0
ObjectMaxCardinality	20	1.140449	6.012928	0.0	0.00	0.0	0.00	49.0
ObjectHasValue	19	141.101124	1602.460693	0.0	0.00	0.0	0.00	21288.0
DataHasValue	17	123.005618	1595.465299	0.0	0.00	0.0	0.00	21288.0
ObjectHasSelf	15	0.258427	1.068587	0.0	0.00	0.0	0.00	6.0
DataAllValuesFrom	3	0.106742	1.044144	0.0	0.00	0.0	0.00	13.0
DataMaxCardinality	2	0.011236	0.105700	0.0	0.00	0.0	0.00	1.0

OBO Score (Experimental)

	ontology	score	score_dash	score_impact
145	ro	0.786	0.863	0.709
129	pato	0.687	0.933	0.441
62	go	0.667	0.849	0.486
20	cl	0.605	0.930	0.279
108	obi	0.567	0.732	0.402
100	ncbitaxon	0.560	0.743	0.378
33	doid	0.528	0.939	0.117
111	ogms	0.516	0.796	0.235
67	hp	0.501	0.885	0.117
168	wbls	0.500	0.989	0.011
14	chebi	0.493	0.579	0.408
11	caro	0.479	0.734	0.225
161	uberon	0.478	0.620	0.335
61	gno	0.477	0.949	0.006
49	fbdv	0.475	0.933	0.017
38	eco	0.474	0.943	0.006
34	dpo	0.469	0.937	0.000
134	phipo	0.469	0.937	0.000
174	zeco	0.468	0.935	0.000
56	fypo	0.468	0.936	0.000
43	eupath	0.456	0.901	0.011
120	omrse	0.456	0.817	0.095
169	wbphenotype	0.451	0.891	0.011
13	cdno	0.445	0.890	0.000
97	mro	0.445	0.889	0.000
94	mp	0.439	0.844	0.034
9	bspo	0.431	0.789	0.073
137	po	0.429	0.770	0.089
2	aism	0.421	0.842	0.000
55	fovt	0.421	0.843	0.000
17	chmo	0.418	0.785	0.050
144	rbo	0.415	0.831	0.000
151	so	0.412	0.679	0.145
82	mf	0.410	0.792	0.028
44	exo	0.404	0.791	0.017
92	mondo	0.399	0.770	0.028
122	ons	0.375	0.733	0.017
167	wbbt	0.375	0.739	0.011
84	mfoem	0.374	0.743	0.006
148	sbo	0.374	0.748	0.000
165	vt	0.374	0.731	0.017
80	maxo	0.374	0.743	0.006
32	dideo	0.372	0.733	0.011
47	fbbt	0.371	0.720	0.022
35	dron	0.371	0.664	0.078
28	cto	0.370	0.740	0.000
4	apo	0.367	0.735	0.000
41	emapa	0.367	0.735	0.000
1	agro	0.366	0.727	0.006
104	oae	0.362	0.647	0.078
21	clao	0.356	0.712	0.000
48	fbcv	0.356	0.696	0.017
77	labo	0.356	0.713	0.000
25	cob	0.353	0.689	0.017
119	omp	0.351	0.685	0.017
101	ncit	0.349	0.581	0.117
103	nomen	0.348	0.697	0.000
18	cido	0.340	0.673	0.006
131	pdro	0.334	0.645	0.022
54	foodon	0.329	0.580	0.079
72	iceo	0.328	0.655	0.000
164	vo	0.324	0.571	0.078
6	aro	0.320	0.622	0.017
170	xao	0.000	0.000	0.017
93	mop	0.000	0.000	0.017
86	mi	0.000	0.000	0.017
109	obib	0.000	0.000	0.017
117	omit	0.000	0.000	0.017
36	duo	0.000	0.000	0.017
106	oba	0.000	0.000	0.017
175	zfa	0.000	0.000	0.017
75	ino	0.000	0.000	0.017
125	opl	0.000	0.000	0.017
45	fao	0.000	0.000	0.017
172	xlmod	0.000	0.000	0.000
107	obcs	0.000	0.000	0.022
110	ogg	0.000	0.000	0.051
8	bfo	0.000	0.000	0.770
140	pr	0.000	0.000	0.230
42	envo	0.000	0.000	0.180
162	uo	0.000	0.000	0.169
74	ido	0.000	0.000	0.112
130	pco	0.000	0.000	0.112
5	apollo_sv	0.000	0.000	0.096
99	nbo	0.000	0.000	0.090
153	stato	0.000	0.000	0.073
52	fma	0.000	0.000	0.056
22	clo	0.000	0.000	0.056
60	geo	0.000	0.000	0.045
68	hsapdv	0.000	0.000	0.022
163	upheno	0.000	0.000	0.039
155	symp	0.000	0.000	0.039
156	taxrank	0.000	0.000	0.011
24	cmo	0.000	0.000	0.039
58	genepio	0.000	0.000	0.034
133	peco	0.000	0.000	0.034
95	mpath	0.000	0.000	0.034
10	bto	0.000	0.000	0.028
126	opmi	0.000	0.000	0.028
73	ico	0.000	0.000	0.028
158	trans	0.000	0.000	0.028
176	zfs	0.000	0.000	0.011
39	ecocore	0.000	0.000	0.011
64	hancestro	0.000	0.000	0.011
136	planp	0.000	0.000	0.000
27	cteno	0.000	0.000	0.000
53	fobi	0.000	0.000	0.000
70	htn	0.000	0.000	0.000
128	ovae	0.000	0.000	0.000
123	ontoneo	0.000	0.000	0.000
0	aeo	0.000	0.000	0.000
81	mco	0.000	0.000	0.000
71	iao	0.000	0.000	0.000
132	pdumdv	0.000	0.000	0.000
166	vto	0.000	0.000	0.000
159	tto	0.000	0.000	0.000
19	cio	0.000	0.000	0.000
116	olatdv	0.000	0.000	0.000
66	hom	0.000	0.000	0.000
16	chiro	0.000	0.000	0.000
46	fbbi	0.000	0.000	0.000
31	ddpheno	0.000	0.000	0.000
79	mamo	0.000	0.000	0.000
141	psdo	0.000	0.000	0.000
50	fideo	0.000	0.000	0.000
149	scdo	0.000	0.000	0.000
112	ogsf	0.000	0.000	0.000
65	hao	0.000	0.000	0.000
76	kisao	0.000	0.000	0.000
113	ohd	0.000	0.000	0.000
78	ma	0.000	0.000	0.000
83	mfmo	0.000	0.000	0.000
23	clyh	0.000	0.000	0.000
15	cheminf	0.000	0.000	0.000
105	oarcs	0.000	0.000	0.000
69	hso	0.000	0.000	0.000
139	ppo	0.000	0.000	0.000
37	ecao	0.000	0.000	0.000
138	poro	0.000	0.000	0.000
115	ohpi	0.000	0.000	0.000
87	miapa	0.000	0.000	0.000
124	oostt	0.000	0.000	0.011
114	ohmi	0.000	0.000	0.006
89	mmo	0.000	0.000	0.006
96	mpio	0.000	0.000	0.006
12	cdao	0.000	0.000	0.006
135	plana	0.000	0.000	0.006
7	bco	0.000	0.000	0.006
150	sepio	0.000	0.000	0.006
3	amphx	0.000	0.000	0.000
91	mod	0.000	0.000	0.011
59	geno	0.000	0.000	0.011
29	cvdo	0.000	0.000	0.011
98	ms	0.000	0.000	0.011
85	mfomd	0.000	0.000	0.011
102	ncro	0.000	0.000	0.011
177	zp	0.000	0.000	0.011
171	xco	0.000	0.000	0.011
30	ddanat	0.000	0.000	0.006
51	flopo	0.000	0.000	0.006
26	cro	0.000	0.000	0.000
40	ecto	0.000	0.000	0.006
90	mmusdv	0.000	0.000	0.000
152	spd	0.000	0.000	0.000
160	txpo	0.000	0.000	0.000
142	pso	0.000	0.000	0.000
121	one	0.000	0.000	0.000
146	rs	0.000	0.000	0.000
57	gecko	0.000	0.000	0.000
127	ornaseq	0.000	0.000	0.000
147	rxno	0.000	0.000	0.006
173	xpo	0.000	0.000	0.006
88	micro	0.000	0.000	0.006
143	pw	0.000	0.000	0.006
157	to	0.000	0.000	0.006
154	swo	0.000	0.000	0.006
63	gsso	0.000	0.000	0.006
118	omo	0.000	0.000	0.955

OBO Score Summary

	count	mean	std	min	25%	50%	75%	max
score	178.0	0.152556	0.213690	0.0	0.0	0.000	0.37075	0.786
score_dash	178.0	0.274961	0.378200	0.0	0.0	0.000	0.71825	0.989
score_impact	178.0	0.051556	0.131058	0.0	0.0	0.011	0.02800	0.955

OBO dependency graph